STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g28560DBnaA01g28560D protein. (392 aa)    
Predicted Functional Partners:
BnaA09g09240D
BnaA09g09240D protein.
  
   
 0.569
BnaC09g09470D
BnaC09g09470D protein.
  
   
 0.565
BnaA05g26620D
BnaA05g26620D protein.
   
  
 0.510
BnaC05g40660D
BnaC05g40660D protein.
   
  
 0.510
BnaA09g46480D
BnaA09g46480D protein.
  
     0.504
BnaA09g07380D
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.
   
  
 0.494
BnaC03g58140D
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.
      
 0.493
BnaA02g05640D
BnaA02g05640D protein; Belongs to the peroxidase family.
   
  
 0.488
BnaC02g09490D
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.
   
  
 0.488
BnaA03g54870D
BnaA03g54870D protein.
  
     0.488
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.