Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g28280DBnaA01g28280D protein. (371 aa)    
Predicted Functional Partners:
BnaAnng29660D
BnaAnng29660D protein.
      
 0.546
BnaCnng14770D
BnaCnng14770D protein.
      
 0.463
BnaA09g10900D
BnaA09g10900D protein.
      
 0.463
BnaCnng43240D
BnaCnng43240D protein.
      
 0.463
BnaAnng38360D
BnaAnng38360D protein.
      
 0.463
BnaC01g19100D
BnaC01g19100D protein.
  
  
  0.448
BnaC04g15340D
Hexosyltransferase; Belongs to the glycosyltransferase 8 family.
      
 0.444
BnaA01g33020D
Hexosyltransferase; Belongs to the glycosyltransferase 8 family.
      
 0.444
BnaC03g74220D
Hexosyltransferase; Belongs to the glycosyltransferase 8 family.
      
 0.444
BnaA08g14260D
Mitogen-activated protein kinase kinase kinase 16.1; Belongs to the protein kinase superfamily.
  
  
  0.442
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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