STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g30420DBnaA09g30420D protein. (182 aa)    
Predicted Functional Partners:
BnaC09g08810D
BnaC09g08810D protein.
   
 0.955
BnaA07g04040D
BnaA07g04040D protein.
   
 0.955
BnaC03g13470D
BnaC03g13470D protein.
   
 0.803
BnaC03g13870D
BnaC03g13870D protein.
   
 0.803
BnaC03g13880D
BnaC03g13880D protein.
   
 0.803
BnaC03g13930D
BnaC03g13930D protein.
   
 0.803
BnaA02g08820D
BnaA02g08820D protein.
   
 0.803
BnaC01g39690D
BnaC01g39690D protein.
   
 0.803
BnaC05g24360D
BnaC05g24360D protein.
   
 0.803
BnaC09g28660D
BnaC09g28660D protein.
   
 0.803
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.