STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g05450DBnaC04g05450D protein. (277 aa)    
Predicted Functional Partners:
BnaA02g22130D
BnaA02g22130D protein.
    
 
 0.429
BnaCnng59710D
BnaCnng59710D protein.
  
   
 0.424
BnaA07g25280D
BnaA07g25280D protein.
  
    0.418
BnaC08g21780D
BnaC08g21780D protein.
  
     0.414
BnaC02g13730D
BnaC02g13730D protein.
  
    0.410
BnaC08g09090D
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
    0.407
BnaC09g12820D
BnaC09g12820D protein.
  
     0.404
BnaAnng03650D
BnaAnng03650D protein.
  
     0.404
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.