STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g08940DBnaA02g08940D protein. (794 aa)    
Predicted Functional Partners:
BnaA02g24890D
BnaA02g24890D protein.
    
 
 0.724
BnaC02g33040D
BnaC02g33040D protein.
    
 
 0.724
BnaA09g06770D
BnaA09g06770D protein.
   
 
 0.679
BnaA06g23400D
BnaA06g23400D protein.
   
 
 0.679
BnaA06g23390D
BnaA06g23390D protein.
   
 
 0.679
BnaC09g47370D
BnaC09g47370D protein.
    
 0.670
BnaCnng58390D
BnaCnng58390D protein.
    
 0.670
BnaA02g12160D
Endoglucanase.
      
 0.641
BnaC02g43100D
BnaC02g43100D protein.
     
 0.621
BnaC02g43090D
BnaC02g43090D protein.
     
 0.621
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.