BnaA01g29140D protein (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BnaA01g29140D

BnaA01g29140D protein. (1019 aa)

Predicted Functional Partners:

BnaA01g25940D

0.750

BnaA09g06200D

0.724

BnaA06g35070D

0.723

BnaCnng18680D

0.714

BnaA09g05020D

0.705

BnaA01g05970D

0.705

BnaC02g00410D

0.705

BnaA06g22840D

0.705

BnaA01g07400D

0.705

BnaA05g15410D

0.705

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g05970D	BnaA01g07400D	A0A078GSW9	A0A078I1M6	BnaA01g05970D protein.	BnaA01g07400D protein.	0.787
BnaA01g05970D	BnaA01g29140D	A0A078GSW9	A0A078G629	BnaA01g05970D protein.	BnaA01g29140D protein.	0.705
BnaA01g05970D	BnaA05g15410D	A0A078GSW9	A0A078I289	BnaA01g05970D protein.	BnaA05g15410D protein.	0.787
BnaA01g05970D	BnaA06g35070D	A0A078GSW9	A0A078FZC7	BnaA01g05970D protein.	BnaA06g35070D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.423
BnaA01g05970D	BnaA09g06200D	A0A078GSW9	A0A078FVE0	BnaA01g05970D protein.	BnaA09g06200D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.560
BnaA01g05970D	BnaCnng18680D	A0A078GSW9	A0A078IJC1	BnaA01g05970D protein.	BnaCnng18680D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.793
BnaA01g07400D	BnaA01g05970D	A0A078I1M6	A0A078GSW9	BnaA01g07400D protein.	BnaA01g05970D protein.	0.787
BnaA01g07400D	BnaA01g25940D	A0A078I1M6	A0A078HWS2	BnaA01g07400D protein.	BnaA01g25940D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.592
BnaA01g07400D	BnaA01g29140D	A0A078I1M6	A0A078G629	BnaA01g07400D protein.	BnaA01g29140D protein.	0.705
BnaA01g07400D	BnaA06g22840D	A0A078I1M6	A0A078HV20	BnaA01g07400D protein.	BnaA06g22840D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.787
BnaA01g07400D	BnaA09g05020D	A0A078I1M6	A0A078G344	BnaA01g07400D protein.	BnaA09g05020D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.787
BnaA01g07400D	BnaA09g06200D	A0A078I1M6	A0A078FVE0	BnaA01g07400D protein.	BnaA09g06200D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.465
BnaA01g07400D	BnaC02g00410D	A0A078I1M6	A0A078HS28	BnaA01g07400D protein.	BnaC02g00410D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.787
BnaA01g25940D	BnaA01g07400D	A0A078HWS2	A0A078I1M6	BnaA01g25940D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaA01g07400D protein.	0.592
BnaA01g25940D	BnaA01g29140D	A0A078HWS2	A0A078G629	BnaA01g25940D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaA01g29140D protein.	0.750
BnaA01g25940D	BnaA09g06200D	A0A078HWS2	A0A078FVE0	BnaA01g25940D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaA09g06200D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.597
BnaA01g25940D	BnaC02g00410D	A0A078HWS2	A0A078HS28	BnaA01g25940D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaC02g00410D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.787
BnaA01g29140D	BnaA01g05970D	A0A078G629	A0A078GSW9	BnaA01g29140D protein.	BnaA01g05970D protein.	0.705
BnaA01g29140D	BnaA01g07400D	A0A078G629	A0A078I1M6	BnaA01g29140D protein.	BnaA01g07400D protein.	0.705
BnaA01g29140D	BnaA01g25940D	A0A078G629	A0A078HWS2	BnaA01g29140D protein.	BnaA01g25940D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.750