STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g24510DBnaA08g24510D protein. (435 aa)    
Predicted Functional Partners:
BnaC05g13930D
BnaC05g13930D protein.
   
 0.982
BnaA09g44720D
BnaA09g44720D protein.
   
 0.982
BnaA06g12300D
BnaA06g12300D protein.
   
 0.982
BnaC02g38280D
BnaC02g38280D protein.
  
  
 
0.901
BnaAnng14180D
BnaAnng14180D protein.
  
  
 
0.900
BnaC03g63120D
BnaC03g63120D protein.
   
 
 0.775
BnaA09g17580D
BnaA09g17580D protein.
   
 
 0.775
BnaC09g18810D
BnaC09g18810D protein.
   
 
 0.775
BnaC05g39670D
BnaC05g39670D protein.
   
 
 0.775
BnaC01g37420D
BnaC01g37420D protein.
   
 
 0.775
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.