STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g09120DBnaA02g09120D protein. (235 aa)    
Predicted Functional Partners:
BnaA03g46620D
BnaA03g46620D protein.
  
     0.537
BnaA02g29230D
BnaA02g29230D protein.
  
     0.523
BnaCnng08850D
BnaCnng08850D protein.
  
     0.511
BnaAnng30280D
BnaAnng30280D protein.
  
     0.492
BnaC04g54080D
BnaC04g54080D protein.
  
     0.488
BnaC03g66180D
BnaC03g66180D protein.
  
     0.482
BnaA09g38320D
BnaA09g38320D protein.
  
     0.466
BnaAnng33710D
BnaAnng33710D protein.
  
     0.461
BnaCnng54130D
BnaCnng54130D protein.
  
     0.459
BnaCnng07850D
BnaCnng07850D protein.
  
     0.458
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.