STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g47800DBnaC09g47800D protein. (546 aa)    
Predicted Functional Partners:
BnaA09g44210D
BnaA09g44210D protein.
    
 
 0.483
BnaA06g13460D
BnaA06g13460D protein.
    
 
 0.483
BnaA06g13620D
BnaA06g13620D protein.
    
 
 0.483
BnaA02g29490D
BnaA02g29490D protein.
      
 0.468
BnaC07g50000D
BnaC07g50000D protein.
      
 0.465
BnaC07g31140D
BnaC07g31140D protein.
      
 0.454
BnaCnng04890D
BnaCnng04890D protein.
    
 
 0.423
BnaA08g19170D
BnaA08g19170D protein.
    
 
 0.423
BnaA07g36710D
BnaA07g36710D protein.
    
 
 0.423
BnaA06g37310D
BnaA06g37310D protein.
      
 0.422
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.