STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g44080DBnaA09g44080D protein. (124 aa)    
Predicted Functional Partners:
BnaC05g02920D
BnaC05g02920D protein.
  
     0.532
BnaC01g24150D
BnaC01g24150D protein.
  
     0.525
BnaAnng03600D
BnaAnng03600D protein.
  
     0.525
BnaC08g44010D
BnaC08g44010D protein.
  
     0.523
BnaC04g08430D
BnaC04g08430D protein.
  
     0.514
BnaA09g40370D
BnaA09g40370D protein.
  
     0.507
BnaA06g34240D
BnaA06g34240D protein.
  
     0.505
BnaA07g38420D
BnaA07g38420D protein.
  
     0.505
BnaA04g13710D
BnaA04g13710D protein.
  
     0.498
BnaC02g44340D
BnaA05g11750D protein.
  
     0.498
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.