Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g00080DBnaC09g00080D protein; Belongs to the protein kinase superfamily. (483 aa)    
Predicted Functional Partners:
BnaC02g06870D
BnaC02g06870D protein.
      
 0.683
BnaC03g54720D
BnaC03g54720D protein.
      
 0.679
BnaA06g02470D
BnaA06g02470D protein; Belongs to the protein kinase superfamily.
  
   
 0.667
BnaC06g04410D
BnaC06g04410D protein; Belongs to the protein kinase superfamily.
  
   
 0.661
BnaC06g29630D
BnaC06g29630D protein.
    
 0.558
BnaA03g00100D
BnaA03g00100D protein.
    
 0.557
BnaC03g71310D
BnaC03g71310D protein.
    
 0.557
BnaA05g20080D
BnaA05g20080D protein; Belongs to the protein kinase superfamily.
  
   
 0.550
BnaA01g23420D
BnaA01g23420D protein.
      
 0.534
BnaC01g30510D
BnaC01g30510D protein.
      
 0.534
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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