STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g00280DBnaC09g00280D protein. (113 aa)    
Predicted Functional Partners:
BnaA07g07810D
BnaA07g07810D protein.
   
  
 0.512
BnaA04g15200D
BnaA04g15200D protein.
      
 0.497
BnaA07g03280D
BnaA07g03280D protein.
      
 0.495
BnaC09g26150D
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
      
 0.493
BnaA08g13530D
BnaA08g13530D protein.
      
 0.465
BnaA01g07830D
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
      
 0.465
BnaA09g02260D
BnaA09g02260D protein.
      
 0.456
BnaC04g32020D
BnaC04g32020D protein.
      
 0.456
BnaC04g26910D
BnaC04g26910D protein.
      
 0.456
BnaA04g11820D
BnaA04g11820D protein.
   
 
 0.442
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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