STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g49130DBnaC04g49130D protein. (264 aa)    
Predicted Functional Partners:
BnaCnng23040D
BnaCnng23040D protein.
   
 0.993
BnaA08g13850D
BnaA08g13850D protein.
   
 0.991
BnaC06g42660D
BnaC06g42660D protein.
   
 0.991
BnaC07g03320D
BnaC07g03320D protein.
   
 0.989
BnaA05g28310D
BnaA05g28310D protein.
   
 0.987
BnaA09g38450D
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.987
BnaA01g31610D
BnaA01g31610D protein.
   
 0.987
BnaA04g27370D
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.987
BnaC04g55100D
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.987
BnaCnng40350D
BnaCnng40350D protein.
   
 0.987
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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