STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g43970DBnaC04g43970D protein. (90 aa)    
Predicted Functional Partners:
BnaC03g66160D
BnaC03g66160D protein.
   
 0.579
BnaA03g52790D
BnaA03g52790D protein.
   
 0.579
BnaC04g03470D
BnaC04g03470D protein.
  
 
  0.515
BnaA05g19600D
BnaA05g19600D protein.
   
 
0.508
BnaC05g30720D
BnaC05g30720D protein.
   
 
0.508
BnaC04g12170D
BnaC04g12170D protein.
    
 0.498
BnaA04g16720D
RING-type E3 ubiquitin transferase.
    
 
 0.489
BnaC05g04830D
Exocyst subunit Exo70 family protein; Component of the exocyst complex.
   
 
 0.481
BnaAnng20840D
BnaAnng20840D protein; Belongs to the leguminous lectin family.
  
  
 0.480
BnaA01g26180D
RING-type E3 ubiquitin transferase.
    
 0.477
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.