STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g01070DBnaA09g01070D protein. (462 aa)    
Predicted Functional Partners:
BnaAnng09290D
BnaAnng09290D protein.
    
 
 0.677
BnaCnng25580D
BnaCnng25580D protein.
  
  
  0.591
BnaC09g53180D
BnaC09g53180D protein.
  
     0.497
BnaA09g53460D
BnaA09g53460D protein.
      
 0.493
BnaA10g07230D
BnaA10g07230D protein.
  
     0.491
BnaA02g05370D
BnaA02g05370D protein.
      
 0.475
BnaC03g48190D
BnaC03g48190D protein.
    
 0.455
BnaC02g23320D
BnaC02g23320D protein; Belongs to the SKP1 family.
    
 0.455
BnaA08g02970D
BnaA08g02970D protein; Belongs to the SKP1 family.
    
 0.455
BnaA02g22640D
BnaA02g22640D protein; Belongs to the SKP1 family.
    
 0.455
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.