Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g25920DBnaC02g25920D protein. (703 aa)    
Predicted Functional Partners:
BnaA09g00400D
BnaA09g00400D protein.
     
 0.585
BnaCnng44730D
BnaCnng44730D protein.
     
 0.585
BnaCnng54720D
BnaCnng54720D protein.
     
 0.585
BnaA09g04780D
BnaA09g04780D protein.
      
 0.498
BnaA09g45050D
BnaA09g45050D protein.
      
 0.479
BnaA06g11590D
BnaA06g11590D protein.
      
 0.479
BnaC05g13430D
BnaC05g13430D protein.
      
 0.479
BnaA10g09070D
Thioredoxin; Belongs to the thioredoxin family.
    
 
 0.457
BnaA02g12160D
Endoglucanase.
      
 0.449
BnaC05g47380D
BnaC05g47380D protein.
      
 0.449
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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