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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g25920DBnaC02g25920D protein. (703 aa)    
Predicted Functional Partners:
BnaA09g00400D
BnaA09g00400D protein.
   
 
 0.493
BnaCnng44730D
BnaCnng44730D protein.
   
 
 0.493
BnaCnng54720D
BnaCnng54720D protein.
   
 
 0.493
BnaA09g04780D
BnaA09g04780D protein.
      
 0.473
BnaA02g12160D
Endoglucanase.
      
 0.469
BnaCnng73600D
BnaCnng73600D protein.
      
 0.469
BnaA10g11930D
BnaA10g11930D protein.
      
 0.465
BnaCnng31900D
BnaCnng31900D protein.
      
 0.465
BnaAnng16460D
BnaAnng16460D protein.
      
 0.465
BnaAnng31710D
BnaAnng31710D protein.
      
 0.465
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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