BnaC01g37700D protein (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BnaC01g37700D

BnaC01g37700D protein. (154 aa)

Predicted Functional Partners:

BnaC03g66580D

0.714

BnaA08g11770D

0.714

BnaA03g52520D

0.714

BnaC09g37350D

0.695

BnaA04g13550D

0.695

BnaCnng18680D

0.695

BnaCnng76560D

0.695

BnaC07g31220D

0.685

BnaC03g64840D

0.685

BnaC06g27800D

0.685

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA03g52520D	BnaA08g11770D	A0A078I8E5	A0A078I4U9	BnaA03g52520D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaA08g11770D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.900
BnaA03g52520D	BnaC01g37700D	A0A078I8E5	A0A078GCG8	BnaA03g52520D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaC01g37700D protein.	0.714
BnaA03g52520D	BnaC03g64840D	A0A078I8E5	A0A078GQH1	BnaA03g52520D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaC03g64840D protein.	0.740
BnaA03g52520D	BnaC06g27800D	A0A078I8E5	A0A078ISC8	BnaA03g52520D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaC06g27800D protein.	0.705
BnaA03g52520D	BnaC09g37350D	A0A078I8E5	A0A078FVU4	BnaA03g52520D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaC09g37350D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.970
BnaA03g52520D	BnaCnng18680D	A0A078I8E5	A0A078IJC1	BnaA03g52520D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaCnng18680D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.714
BnaA03g52520D	BnaCnng76560D	A0A078I8E5	A0A078K2U5	BnaA03g52520D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaCnng76560D protein.	0.601
BnaA04g13550D	BnaC01g37700D	A0A078HNI2	A0A078GCG8	BnaA04g13550D protein.	BnaC01g37700D protein.	0.695
BnaA04g13550D	BnaC03g64840D	A0A078HNI2	A0A078GQH1	BnaA04g13550D protein.	BnaC03g64840D protein.	0.584
BnaA04g13550D	BnaCnng76560D	A0A078HNI2	A0A078K2U5	BnaA04g13550D protein.	BnaCnng76560D protein.	0.787
BnaA08g11770D	BnaA03g52520D	A0A078I4U9	A0A078I8E5	BnaA08g11770D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaA03g52520D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.900
BnaA08g11770D	BnaC01g37700D	A0A078I4U9	A0A078GCG8	BnaA08g11770D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaC01g37700D protein.	0.714
BnaA08g11770D	BnaC03g64840D	A0A078I4U9	A0A078GQH1	BnaA08g11770D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaC03g64840D protein.	0.740
BnaA08g11770D	BnaC06g27800D	A0A078I4U9	A0A078ISC8	BnaA08g11770D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaC06g27800D protein.	0.705
BnaA08g11770D	BnaC09g37350D	A0A078I4U9	A0A078FVU4	BnaA08g11770D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaC09g37350D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.970
BnaA08g11770D	BnaCnng18680D	A0A078I4U9	A0A078IJC1	BnaA08g11770D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaCnng18680D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.714
BnaA08g11770D	BnaCnng76560D	A0A078I4U9	A0A078K2U5	BnaA08g11770D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	BnaCnng76560D protein.	0.601
BnaC01g37700D	BnaA03g52520D	A0A078GCG8	A0A078I8E5	BnaC01g37700D protein.	BnaA03g52520D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.714
BnaC01g37700D	BnaA04g13550D	A0A078GCG8	A0A078HNI2	BnaC01g37700D protein.	BnaA04g13550D protein.	0.695
BnaC01g37700D	BnaA08g11770D	A0A078GCG8	A0A078I4U9	BnaC01g37700D protein.	BnaA08g11770D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.714