BnaA04g05900D protein (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BnaA04g05900D

BnaA04g05900D protein. (94 aa)

Predicted Functional Partners:

BnaC03g16250D

0.800

BnaA03g18760D

0.790

BnaC04g05620D

0.790

BnaC08g26550D

0.790

BnaC03g72600D

0.790

BnaC04g55570D

0.790

BnaA09g35230D

0.790

BnaA09g08290D

0.760

BnaC03g15020D

0.670

BnaC03g15030D

0.670

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA03g18760D	BnaA04g05900D	A0A078EZV7	A0A078GCV0	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	BnaA04g05900D protein.	0.790
BnaA03g18760D	BnaA09g08290D	A0A078EZV7	A0A078HK27	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	BnaA09g08290D protein.	0.515
BnaA03g18760D	BnaA09g35230D	A0A078EZV7	Q9AXN3	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.999
BnaA03g18760D	BnaC03g15020D	A0A078EZV7	A0A078HLJ2	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	BnaC03g15020D protein.	0.813
BnaA03g18760D	BnaC03g15030D	A0A078EZV7	A0A078HMB5	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	BnaC03g15030D protein.	0.813
BnaA03g18760D	BnaC03g16250D	A0A078EZV7	A0A078I6P0	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	BnaC03g16250D protein.	0.838
BnaA03g18760D	BnaC03g72600D	A0A078EZV7	A0A078JC38	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.999
BnaA03g18760D	BnaC04g05620D	A0A078EZV7	A0A078G6B4	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.999
BnaA03g18760D	BnaC04g55570D	A0A078EZV7	A0A078JDW4	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.999
BnaA03g18760D	BnaC08g26550D	A0A078EZV7	A0A078HWQ9	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.999
BnaA04g05900D	BnaA03g18760D	A0A078GCV0	A0A078EZV7	BnaA04g05900D protein.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.790
BnaA04g05900D	BnaA09g08290D	A0A078GCV0	A0A078HK27	BnaA04g05900D protein.	BnaA09g08290D protein.	0.760
BnaA04g05900D	BnaA09g35230D	A0A078GCV0	Q9AXN3	BnaA04g05900D protein.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.790
BnaA04g05900D	BnaC03g15020D	A0A078GCV0	A0A078HLJ2	BnaA04g05900D protein.	BnaC03g15020D protein.	0.670
BnaA04g05900D	BnaC03g15030D	A0A078GCV0	A0A078HMB5	BnaA04g05900D protein.	BnaC03g15030D protein.	0.670
BnaA04g05900D	BnaC03g16250D	A0A078GCV0	A0A078I6P0	BnaA04g05900D protein.	BnaC03g16250D protein.	0.800
BnaA04g05900D	BnaC03g72600D	A0A078GCV0	A0A078JC38	BnaA04g05900D protein.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.790
BnaA04g05900D	BnaC04g05620D	A0A078GCV0	A0A078G6B4	BnaA04g05900D protein.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.790
BnaA04g05900D	BnaC04g55570D	A0A078GCV0	A0A078JDW4	BnaA04g05900D protein.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.790
BnaA04g05900D	BnaC08g26550D	A0A078GCV0	A0A078HWQ9	BnaA04g05900D protein.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.790