Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC07g31300DBnaC07g31300D protein. (361 aa)    
Predicted Functional Partners:
BnaC05g02690D
BnaC05g02690D protein.
      
 0.840
BnaC05g47430D
BnaC05g47430D protein.
     
 0.752
BnaA05g33180D
BnaA05g33180D protein.
     
 0.752
BnaA06g19800D
BnaA06g19800D protein.
      
 0.709
BnaA07g00830D
BnaA07g00830D protein.
   
  
 0.696
BnaA09g09930D
BnaA09g09930D protein.
   
  
 0.696
BnaA04g29340D
BnaA04g29340D protein.
   
  
 0.696
BnaC07g16580D
BnaC07g16580D protein.
      
 0.615
BnaC02g43970D
BnaC02g43970D protein.
      
 0.615
BnaA02g34690D
BnaA02g34690D protein.
      
 0.615
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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