STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g49890DBnaC04g49890D protein. (715 aa)    
Predicted Functional Partners:
BnaA03g17240D
BnaA03g17240D protein.
  
     0.530
BnaC09g11180D
BnaC09g11180D protein.
  
     0.529
BnaC07g41740D
BnaC07g41740D protein.
  
     0.529
BnaAnng34440D
BnaAnng34440D protein.
  
     0.529
BnaA09g10930D
BnaA09g10930D protein.
  
     0.528
BnaC06g14920D
BnaC06g14920D protein.
  
     0.527
BnaCnng37070D
BnaCnng37070D protein.
  
     0.527
BnaA03g49330D
BnaA03g49330D protein.
  
     0.526
BnaA03g12840D
BnaA03g12840D protein.
  
     0.523
BnaC09g28910D
BnaC09g28910D protein.
  
     0.521
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.