STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g40300DBnaC05g40300D protein. (588 aa)    
Predicted Functional Partners:
BnaC09g12810D
BnaC09g12810D protein.
  
 
 0.687
BnaA09g12410D
BnaA09g12410D protein.
  
 
 0.687
BnaCnng07930D
BnaCnng07930D protein.
    
 0.606
BnaA04g15200D
BnaA04g15200D protein.
  
  
 0.557
BnaC08g09940D
BnaC08g09940D protein.
    
  0.506
BnaA08g05520D
BnaA08g05520D protein.
    
  0.506
BnaA01g18840D
BnaA01g18840D protein.
    
  0.506
BnaC01g22660D
BnaC01g22660D protein.
    
  0.506
BnaC02g00190D
BnaC02g00190D protein.
      
 0.499
BnaC06g15370D
BnaC06g15370D protein; Belongs to the SIS family. GutQ/KpsF subfamily.
      
 0.472
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.