STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g39650DBnaC05g39650D protein. (525 aa)    
Predicted Functional Partners:
BnaC07g31620D
BnaC07g31620D protein.
    
 0.772
BnaAnng03890D
BnaAnng03890D protein.
    
 0.772
BnaC07g32160D
BnaC07g32160D protein.
    
 0.594
BnaA01g19540D
BnaA01g19540D protein.
    
 0.594
BnaC01g42420D
BnaC01g42420D protein.
    
 0.594
BnaC03g73190D
BnaC03g73190D protein.
    
  0.527
BnaA04g15440D
BnaA04g15440D protein.
    
 0.523
BnaA06g34130D
BnaA06g34130D protein.
  
     0.494
BnaC02g02090D
BnaC02g02090D protein.
  
     0.493
BnaA03g01660D
BnaA03g01660D protein.
  
     0.492
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.