STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g40230DBnaC02g40230D protein. (80 aa)    
Predicted Functional Partners:
BnaC03g73190D
BnaC03g73190D protein.
  
 0.973
BnaA02g04740D
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.959
BnaA04g05330D
BnaA04g05330D protein.
   
 0.953
BnaC06g14370D
BnaC06g14370D protein.
  
 0.940
BnaC04g08700D
BnaC04g08700D protein.
  
 0.940
BnaA09g17440D
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.929
BnaA04g15360D
BnaA04g15360D protein.
    
 0.929
BnaC02g00390D
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.929
BnaC03g77310D
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.929
BnaA08g30710D
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.929
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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