STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g40070DBnaC05g40070D protein. (1290 aa)    
Predicted Functional Partners:
BnaC09g43520D
BnaC09g43520D protein.
    
 0.962
BnaC04g32430D
BnaC04g32430D protein.
    
 0.962
BnaC04g32440D
BnaC04g32440D protein.
    
 0.962
BnaC03g27570D
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
   
 0.941
BnaC08g43210D
BnaC08g43210D protein.
    
 0.937
BnaA08g27050D
BnaA08g27050D protein.
    
 0.937
BnaCnng14330D
BnaCnng14330D protein.
    
 0.937
BnaCnng14350D
BnaCnng14350D protein.
    
 0.937
BnaCnng27110D
BnaCnng27110D protein.
    
 0.937
BnaAnng28130D
BnaAnng28130D protein.
    
 0.937
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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