STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g43650DBnaC04g43650D protein. (50 aa)    
Predicted Functional Partners:
BnaA06g19800D
BnaA06g19800D protein.
      
 0.457
BnaC05g47430D
BnaC05g47430D protein.
      
 0.457
BnaA05g33180D
BnaA05g33180D protein.
      
 0.457
BnaA04g28420D
BnaA04g28420D protein.
      
 0.457
BnaA07g00830D
BnaA07g00830D protein.
      
 0.408
BnaA09g09930D
BnaA09g09930D protein.
      
 0.408
BnaA04g29340D
BnaA04g29340D protein.
      
 0.408
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.