Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g00890DMitogen-activated protein kinase. (587 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
   
 0.796
BnaA03g00900D
BnaA03g00900D protein.
    
 0.787
BnaA04g05650D
BnaA04g05650D protein.
   
 0.697
BnaAnng41430D
BnaAnng41430D protein.
   
 0.697
BnaA04g05330D
BnaA04g05330D protein.
    
  0.657
BnaC03g66080D
BnaC03g66080D protein.
   
 0.652
BnaA03g52860D
BnaA03g52860D protein; Belongs to the glycosyl hydrolase 17 family.
   
 0.652
BnaC07g08480D
BnaC07g08480D protein.
   
 0.621
BnaA05g31170D
BnaA05g31170D protein.
   
 0.580
BnaAnng16950D
BnaAnng16950D protein; Belongs to the universal ribosomal protein uL5 family.
    
   0.549
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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