STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g30110DBnaC02g30110D protein. (787 aa)    
Predicted Functional Partners:
BnaA09g04670D
BnaA09g04670D protein.
   
 0.989
BnaA08g28140D
BnaA08g28140D protein.
    
 0.986
BnaC05g02960D
BnaC05g02960D protein.
    
 0.986
BnaA08g12390D
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 0.986
BnaC03g63800D
BnaC03g63800D protein.
    
 0.986
BnaC03g67470D
BnaC03g67470D protein.
    
 0.986
BnaCnng55660D
BnaCnng55660D protein.
    
 0.986
BnaC06g10570D
BnaC06g10570D protein.
    
 0.977
BnaC06g06930D
BnaC06g06930D protein.
    
 0.977
BnaCnng30810D
BnaCnng30810D protein.
    
 0.977
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.