STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC01g38190DBnaC01g38190D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (360 aa)    
Predicted Functional Partners:
BnaC03g71080D
BnaC03g71080D protein.
   
  
 0.496
BnaA08g00060D
BnaA08g00060D protein.
   
  
 0.496
BnaC02g23200D
BnaC02g23200D protein.
  
     0.469
BnaA02g19830D
BnaA02g19830D protein.
  
     0.458
BnaC09g43010D
BnaC09g43010D protein.
   
  
 0.446
BnaC02g06740D
BnaC02g06740D protein.
   
  
 0.446
BnaA03g00950D
Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.
      
 0.437
BnaA07g31730D
BnaA07g31730D protein.
   
  
 0.435
BnaA03g01570D
BnaA03g01570D protein.
      
 0.424
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.