Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g02940DBnaA07g02940D protein. (387 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
BnaC08g11580D
BnaC08g11580D protein.
  
 0.553
BnaC06g12340D
BnaC06g12340D protein.
  
  
  0.527
BnaCnng30890D
BnaCnng30890D protein.
  
 
   0.522
BnaC09g17570D
BnaC09g17570D protein.
  
     0.518
BnaC08g40810D
BnaC08g40810D protein.
  
     0.507
BnaA09g46730D
BnaA09g46730D protein.
  
     0.507
BnaC02g01410D
BnaC02g01410D protein.
  
     0.505
BnaAnng06330D
BnaAnng06330D protein.
  
     0.502
BnaC06g09930D
BnaC06g09930D protein.
  
 
  0.496
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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