Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g42600DBnaC03g42600D protein. (157 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
BnaAnng13630D
BnaAnng13630D protein.
     
 0.543
BnaA10g30370D
BnaA10g30370D protein.
  
     0.485
BnaA09g15920D
BnaA09g15920D protein.
  
  
  0.464
BnaCnng02700D
BnaCnng02700D protein.
    
  0.454
BnaC02g03360D
BnaC02g03360D protein.
    
  0.454
BnaA09g00280D
BnaA09g00280D protein.
    
  0.454
BnaC05g46940D
BnaC05g46940D protein.
  
 
  0.449
BnaC04g08810D
BnaC04g08810D protein.
      
 0.445
BnaC07g18590D
BnaC07g18590D protein.
  
     0.442
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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