STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g22050DFormin-like protein; Belongs to the formin-like family. (809 aa)    
Predicted Functional Partners:
BnaC03g12940D
BnaC03g12940D protein.
    
 0.536
BnaC09g32790D
BnaC09g32790D protein; Belongs to the adaptor complexes medium subunit family.
    
 0.536
BnaA10g11470D
BnaA10g11470D protein.
    
 0.536
BnaA03g59830D
BnaA03g59830D protein.
    
 0.467
BnaC03g64060D
BnaC03g64060D protein.
    
 0.467
BnaA02g04490D
BnaA02g04490D protein.
    
 0.467
BnaA01g36730D
BnaA01g36730D protein.
    
 0.467
BnaA08g13460D
Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.
    
 0.450
BnaA03g49520D
Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.
    
 0.450
BnaC03g77670D
Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.
    
 0.450
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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