Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g43490DBnaC04g43490D protein. (355 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
BnaC06g12340D
BnaC06g12340D protein.
  
  
  0.544
BnaA03g46220D
BnaA03g46220D protein.
  
  
  0.539
BnaCnng23020D
BnaCnng23020D protein.
  
  
  0.539
BnaA05g26860D
BnaA05g26860D protein.
  
  
  0.538
BnaA05g26870D
BnaA05g26870D protein.
  
  
  0.538
BnaA02g27500D
BnaA02g27500D protein.
  
  
  0.538
BnaC02g01820D
BnaC02g01820D protein.
  
  
  0.537
BnaC05g40900D
BnaC05g40900D protein.
  
  
  0.537
BnaA01g30830D
BnaA01g30830D protein.
  
  
  0.536
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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