Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC01g37580DBnaC01g37580D protein. (1149 aa)    
Predicted Functional Partners:
BnaX.VTE1.b
BnaA03g52200D protein.
      
 0.442
BnaA05g14660D
BnaA05g14660D protein.
    
 0.425
BnaC03g69430D
BnaC03g69430D protein.
    
 0.425
BnaC06g10060D
BnaC06g10060D protein.
    
 0.425
BnaA01g26500D
BnaA01g26500D protein.
    
 0.400
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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