Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g42560DBnaC03g42560D protein. (410 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
BnaC08g11580D
BnaC08g11580D protein.
  
 
  0.508
BnaC02g01410D
BnaC02g01410D protein.
  
     0.499
BnaAnng06330D
BnaAnng06330D protein.
  
     0.498
BnaCnng64530D
BnaCnng64530D protein.
  
     0.496
BnaC06g09930D
BnaC06g09930D protein.
  
 
  0.494
BnaA01g24490D
BnaA01g24490D protein.
  
     0.492
BnaA03g47790D
BnaA03g47790D protein.
  
     0.488
BnaA03g49830D
BnaA03g49830D protein.
  
     0.484
BnaA07g01400D
BnaA07g01400D protein.
  
     0.482
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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