Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g02930DBnaA07g02930D protein. (285 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
BnaA08g02100D
BnaA08g02100D protein.
  
 
  0.546
BnaC03g35320D
BnaC03g35320D protein.
  
 
   0.541
BnaA09g16330D
BnaA09g16330D protein.
  
  
  0.540
BnaC04g44540D
BnaC04g44540D protein.
  
  
  0.538
BnaA02g27490D
BnaA02g27490D protein.
  
 
  0.534
BnaA09g47990D
BnaA09g47990D protein.
  
  
  0.532
BnaC07g21060D
BnaC07g21060D protein.
  
 
   0.531
BnaC05g21970D
BnaC05g21970D protein.
  
     0.523
BnaCnng30890D
BnaCnng30890D protein.
  
 
   0.523
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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