Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g40010DBnaC02g40010D protein. (655 aa)    
Predicted Functional Partners:
BnaAnng02030D
BnaAnng02030D protein.
      
 0.680
BnaA04g13340D
BnaA04g13340D protein.
      
 0.617
BnaC03g70520D
BnaC03g70520D protein.
      
 0.615
BnaC01g41630D
BnaC01g41630D protein.
    
 
 0.609
BnaC03g72800D
BnaC03g72800D protein.
     
 0.608
BnaCnng05500D
BnaCnng05500D protein.
      
 0.594
BnaA02g26080D
BnaA02g26080D protein.
     
 0.532
BnaC02g34140D
BnaC02g34140D protein.
     
 0.532
BnaA10g11950D
BnaA10g11950D protein.
      
 0.517
BnaC09g33840D
BnaC09g33840D protein.
      
 0.517
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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