STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g33020DBnaC05g33020D protein. (281 aa)    
Predicted Functional Partners:
BnaC06g43020D
BnaC06g43020D protein.
    
 0.718
BnaC06g43030D
BnaC06g43030D protein.
    
 0.718
BnaCnng55160D
BnaCnng55160D protein.
    
 0.718
BnaA09g35650D
BnaA09g35650D protein.
    
 0.706
BnaC06g15800D
BnaC06g15800D protein.
    
 0.706
BnaC04g55510D
BnaC04g55510D protein.
    
 0.706
BnaC04g26510D
Reticulon-like protein.
   
 0.697
BnaA06g02640D
BnaA06g02640D protein.
    
 0.666
BnaC06g03890D
BnaC06g03890D protein.
    
 0.666
BnaC09g42470D
BnaC09g42470D protein.
   
 
 0.652
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.