STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g47370DBnaA09g47370D protein. (414 aa)    
Predicted Functional Partners:
BnaC03g13760D
BnaC03g13760D protein.
  
     0.540
BnaA03g11010D
BnaA03g11010D protein.
  
     0.540
BnaA03g11000D
BnaA03g11000D protein.
  
     0.540
BnaA02g08800D
BnaA02g08800D protein.
  
     0.539
BnaA04g12730D
BnaA04g12730D protein.
  
     0.537
BnaCnng39160D
BnaCnng39160D protein.
  
     0.537
BnaA06g25720D
BnaA06g25720D protein.
  
     0.536
BnaC05g12990D
BnaC05g12990D protein.
  
     0.536
BnaA09g41650D
BnaA09g41650D protein.
  
     0.535
BnaC03g13620D
BnaC03g13620D protein.
  
     0.534
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.