STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g18700DBnaA05g18700D protein. (637 aa)    
Predicted Functional Partners:
BnaC04g19980D
BnaC04g19980D protein.
  
     0.529
BnaC04g01290D
BnaC04g01290D protein.
  
     0.523
BnaC09g13080D
BnaC09g13080D protein.
  
     0.523
BnaC06g42410D
BnaC06g42410D protein.
  
     0.521
BnaA09g12730D
BnaA09g12730D protein.
  
     0.521
BnaCnng22160D
BnaCnng22160D protein.
  
     0.511
BnaA04g29380D
BnaA04g29380D protein.
  
     0.508
BnaA03g47250D
BnaA03g47250D protein.
  
     0.505
BnaA02g33370D
BnaA02g33370D protein.
  
     0.490
BnaA06g14030D
BnaA06g14030D protein.
  
     0.490
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.