Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g15070DBnaA08g15070D protein. (697 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
BnaA09g04110D
BnaA09g04110D protein.
      
 0.551
BnaA01g24840D
S-acyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.489
BnaCnng33710D
S-acyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.489
BnaCnng02700D
BnaCnng02700D protein.
    
  0.454
BnaC02g03360D
BnaC02g03360D protein.
    
  0.454
BnaA09g00280D
BnaA09g00280D protein.
    
  0.454
BnaC03g64840D
BnaC03g64840D protein.
  
 
 
0.411
BnaA04g14070D
BnaA04g14070D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
  
 
0.411
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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