STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g25380DBnaC05g25380D protein. (251 aa)    
Predicted Functional Partners:
BnaC01g10510D
BnaC01g10510D protein.
  
   
 0.568
BnaC07g31220D
BnaC07g31220D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
      
 0.495
BnaA04g15710D
BnaA04g15710D protein.
      
 0.483
BnaA09g35600D
BnaA09g35600D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
      
 0.482
BnaC03g44760D
BnaC03g44760D protein.
      
 0.468
BnaCnng55420D
BnaCnng55420D protein.
      
 0.468
BnaA02g06470D
BnaA02g06470D protein.
      
 0.467
BnaCnng19520D
BnaCnng19520D protein.
      
 0.467
BnaA09g06280D
BnaA09g06280D protein.
      
 0.465
BnaC03g71040D
BnaC03g71040D protein.
      
 0.460
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.