STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g09830DCarbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (259 aa)    
Predicted Functional Partners:
BnaA09g20190D
BnaA09g20190D protein.
      
 0.718
BnaA09g38710D
BnaA09g38710D protein.
  
  
 0.709
BnaC04g22020D
BnaC04g22020D protein.
  
  
 0.709
BnaC06g01580D
BnaC06g01580D protein.
  
 
 0.602
BnaC06g26900D
BnaC06g26900D protein.
  
 
 0.602
BnaA08g06180D
BnaA08g06180D protein.
  
 
 0.602
BnaAnng41100D
BnaAnng41100D protein.
  
 
 0.602
BnaCnng75250D
BnaCnng75250D protein.
  
 
 0.602
BnaA08g14930D
Phosphoserine aminotransferase.
      
 0.503
BnaC09g09440D
Phosphoserine aminotransferase.
      
 0.503
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.