STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g26720DBnaA09g26720D protein. (138 aa)    
Predicted Functional Partners:
BnaC09g38050D
BnaC09g38050D protein.
  
     0.510
BnaC09g33320D
BnaC09g33320D protein.
  
     0.496
BnaA01g14340D
BnaA01g14340D protein.
  
     0.495
BnaC02g08900D
BnaC02g08900D protein.
  
     0.493
BnaA08g13670D
BnaA08g13670D protein.
  
     0.490
BnaC04g51930D
BnaC04g51930D protein.
  
     0.489
BnaC03g76390D
BnaC03g76390D protein.
  
     0.489
BnaA02g04380D
BnaA02g04380D protein.
  
     0.487
BnaA06g40220D
BnaA06g40220D protein.
  
     0.487
BnaCnng60010D
BnaCnng60010D protein.
  
     0.486
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.