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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g51710DBnaC04g51710D protein. (596 aa)    
Predicted Functional Partners:
BnaA06g13220D
BnaA06g13220D protein.
  
 
 0.596
BnaC05g14750D
BnaC05g14750D protein.
  
 
 0.595
BnaA01g12940D
BnaA01g12940D protein.
  
 
 0.551
BnaA01g08250D
BnaA01g08250D protein.
  
   
 0.532
BnaCnng26240D
BnaCnng26240D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
  
 
  0.471
BnaC07g31900D
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
      
 0.470
BnaCnng50120D
BnaCnng50120D protein; Belongs to the protein kinase superfamily.
  
 
  0.468
BnaC05g23680D
BnaC05g23680D protein.
      
 0.465
BnaC02g33070D
BnaC02g33070D protein; Belongs to the protein kinase superfamily.
  
 
  0.456
BnaCnng26520D
BnaCnng26520D protein; Belongs to the protein kinase superfamily.
  
 
  0.456
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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