Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA03g60170DBnaA03g60170D protein. (217 aa)    
Predicted Functional Partners:
BnaAnng32730D
BnaAnng32730D protein.
  
     0.451
BnaA01g07850D
BnaA01g07850D protein.
  
     0.417
BnaA01g30740D
BnaA01g30740D protein.
  
  
  0.417
BnaC02g26030D
BnaC02g26030D protein.
      
 0.409
BnaA07g00650D
BnaA07g00650D protein.
    
  0.409
BnaAnng23990D
BnaAnng23990D protein.
      
 0.409
BnaA02g34110D
BnaA02g34110D protein.
      
 0.408
BnaA06g23360D
BnaA06g23360D protein.
      
 0.408
BnaC02g48830D
BnaC02g48830D protein.
      
 0.408
BnaA07g04980D
BnaA07g04980D protein.
  
  
  0.404
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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