STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g12250DBnaA06g12250D protein. (590 aa)    
Predicted Functional Partners:
BnaC06g09930D
BnaC06g09930D protein.
  
 
 0.550
BnaCnng64530D
BnaCnng64530D protein.
  
     0.521
BnaA01g24490D
BnaA01g24490D protein.
  
     0.504
BnaC04g44540D
BnaC04g44540D protein.
  
 
  0.479
BnaA04g17240D
BnaA04g17240D protein.
  
     0.466
BnaA05g31300D
BnaA05g31300D protein.
  
   
 0.453
BnaC06g23990D
BnaC06g23990D protein.
  
     0.445
BnaCnng14160D
BnaCnng14160D protein.
  
 
 0.433
BnaC03g62030D
BnaC03g62030D protein.
  
     0.423
BnaC03g63890D
Small nuclear ribonucleoprotein-associated protein.
    
 0.411
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.