Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g12200DBnaA06g12200D protein. (837 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
BnaC02g01410D
BnaC02g01410D protein.
  
     0.511
BnaAnng06330D
BnaAnng06330D protein.
  
     0.511
BnaA03g49830D
BnaA03g49830D protein.
  
     0.501
BnaA07g01400D
BnaA07g01400D protein.
  
     0.498
BnaC07g42180D
BnaC07g42180D protein.
  
     0.493
BnaC02g42130D
BnaC02g42130D protein.
  
     0.477
BnaA07g38270D
BnaA07g38270D protein.
  
   
0.459
BnaCnng02700D
BnaCnng02700D protein.
    
  0.454
BnaC02g03360D
BnaC02g03360D protein.
    
  0.454
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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