STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g28170DBnaA09g28170D protein. (622 aa)    
Predicted Functional Partners:
BnaA06g18950D
BnaA06g18950D protein.
   
 
 0.613
BnaC02g42500D
BnaC02g42500D protein.
   
 
 0.613
BnaC02g42490D
BnaC02g42490D protein.
   
 
 0.613
BnaC03g75260D
BnaC03g75260D protein.
   
 
 0.613
BnaCnng61690D
BnaCnng61690D protein.
   
 
 0.613
BnaCnng61700D
BnaCnng61700D protein.
   
 
 0.613
BnaC05g35230D
BnaC05g35230D protein.
    
 
 0.514
BnaC09g47430D
BnaC09g47430D protein.
   
  
 0.504
BnaA09g03810D
BnaA09g03810D protein; Belongs to the cyclin family.
      
 0.493
BnaC09g00220D
BnaC09g00220D protein.
   
    0.481
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.