STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g26680DBnaA09g26680D protein. (1013 aa)    
Predicted Functional Partners:
BnaC05g01910D
BnaC05g01910D protein.
    
 0.543
BnaC09g00380D
BnaC09g00380D protein.
    
 0.475
BnaA09g01220D
BnaA09g01220D protein.
    
 0.475
BnaC06g12820D
BnaC06g12820D protein.
      
 0.467
BnaA09g15230D
BnaA09g15230D protein.
      
 0.465
BnaA04g11260D
BnaA04g11260D protein.
   
  
 0.450
BnaC06g14040D
BnaC06g14040D protein; Belongs to the oxygen-dependent FAD-linked oxidoreductase family.
    
 0.440
BnaA05g08900D
BnaA05g08900D protein.
    
 
 0.438
BnaA09g38290D
BnaA09g38290D protein.
    
 
 0.438
BnaAnng19170D
BnaAnng19170D protein.
    
 
 0.438
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.