Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g24110DNon-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (435 aa)    
Predicted Functional Partners:
BnaA04g05650D
BnaA04g05650D protein.
    
 0.713
BnaAnng41430D
BnaAnng41430D protein.
    
 0.713
BnaA07g00650D
BnaA07g00650D protein.
   
  0.703
BnaC06g42230D
Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.
   
  
 0.648
BnaC05g02690D
BnaC05g02690D protein.
      
 0.634
BnaAnng07610D
BnaAnng07610D protein.
      
 0.634
BnaC07g31300D
BnaC07g31300D protein.
    
 0.613
BnaC05g43690D
BnaC05g43690D protein.
    
 0.592
BnaA05g37130D
BnaA05g37130D protein.
    
 0.592
BnaAnng24320D
BnaAnng24320D protein.
    
 0.592
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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